Curated BLAST for Genomes

 

Curated BLAST

Searching in Stutzerimonas stutzeri A1501 (GCF_000013785.1)

Found 13 curated entries in PaperBLAST's database that match '6.2.1.30' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Stutzerimonas stutzeri A1501, or try another query

PST_RS00545 PST_0106 WP_011911355.1: AMP-binding protein
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

32% id,
92% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

31% id,
90% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
93% cov

fadD1 PST_RS14845 PST_2960 WP_011914061.1: long-chain-fatty-acid--CoA ligase FadD1
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

32% id,
90% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
92% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

32% id,
65% cov

PST_RS16110 PST_3211 WP_011914284.1: AMP-binding protein
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
95% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
94% cov

PST_RS03100 PST_0604 WP_034074001.1: AMP-binding protein
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
94% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
89% cov

fadD2 PST_RS14850 PST_2961 WP_011914062.1: long-chain-fatty-acid--CoA ligase FadD2
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
81% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

33% id,
71% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

33% id,
65% cov

PST_RS09705 PST_1918 WP_041755471.1: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
90% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

23% id,
94% cov

PST_RS05700 PST_1119 WP_041755404.1: fatty acid--CoA ligase
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
93% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
89% cov

PST_RS03200 PST_0623 WP_011911855.1: AMP-dependent synthetase/ligase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

33% id,
32% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
29% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
32% cov

PST_RS02950 PST_0572 WP_011911805.1: AMP-binding protein
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

38% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory