Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichodesmium erythraeum IMS101 (GCF_000014265.1)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Trichodesmium erythraeum IMS101, or try another query

glpK TERY_RS18300 Tery_3810 WP_011613185.1: glycerol kinase GlpK
is similar to:
PaperBLAST

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

28% id,
92% cov

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

26% id,
94% cov

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

26% id,
94% cov

More...

TERY_RS04525 Tery_0974 WP_011610743.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

24% id,
90% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

23% id,
90% cov

SMc03164: Xylulose kinase (EC 2.7.1.17) from Sinorhizobium meliloti

22% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory