Curated BLAST for Genomes

 

Curated BLAST

Searching in Pelobacter propionicus DSM 2379 (GCF_000015045.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pelobacter propionicus DSM 2379, or try another query

PPRO_RS06410 Ppro_1294 WP_011735216.1: homoserine dehydrogenase
is similar to:
PaperBLAST

DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae

43% id,
99% cov

DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris

42% id,
94% cov

Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis

41% id,
95% cov

More...

PPRO_RS11225 Ppro_2262 WP_011736129.1: aspartate kinase
is similar to:
PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

42% id,
54% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

35% id,
42% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron

27% id,
53% cov

More...

PPRO_RS07620 Ppro_1531 WP_011735436.1: uridylate kinase
is similar to:
PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

23% id,
33% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

37% id,
6% cov

pyrH PPRO_RS10150 Ppro_2046 WP_011735920.1: UMP kinase
is similar to:
PaperBLAST

O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max

29% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory