Curated BLAST for Genomes

 

Curated BLAST

Searching in Pelobacter propionicus DSM 2379 (GCF_000015045.1)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pelobacter propionicus DSM 2379, or try another query

PPRO_RS07025 Ppro_1413 WP_011735322.1: homocysteine S-methyltransferase family protein
is similar to:		 PaperBLAST

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 44% id,
100% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 42% id,
100% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

 37% id,
99% cov

More...

PPRO_RS01355 Ppro_0283 WP_011734231.1: bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase
is similar to:		 PaperBLAST

PGA1_c13370: Methionine synthase component, methyltransferase domain (EC:2.1.1.13) from Phaeobacter inhibens

 37% id,
84% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 36% id,
51% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 35% id,
52% cov

More...

PPRO_RS07120 Ppro_1431 WP_011735340.1: cobalamin-dependent protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 28% id,
95% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 31% id,
24% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

 33% id,
22% cov

More...

PPRO_RS12800 Ppro_2593 WP_011736451.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 28% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory