Curated BLAST for Genomes

 

Curated BLAST

Searching in Pelobacter propionicus DSM 2379 (GCF_000015045.1)

Found 52 curated entries in PaperBLAST's database that match '2.5.1.19' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pelobacter propionicus DSM 2379, or try another query

aroA PPRO_RS06685 Ppro_1347 WP_011735260.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

B8CWX4: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Halothermothrix orenii

53% id,
99% cov

Q31RQ5: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Synechococcus elongatus
Q5N2J9: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Synechococcus elongatus

54% id,
96% cov

A6TL04: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Alkaliphilus metalliredigens

53% id,
97% cov

More...

murA PPRO_RS15105 Ppro_3044 WP_011736877.1: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
is similar to:
PaperBLAST

B2IYE4: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Nostoc punctiforme

23% id,
85% cov

aroB PPRO_RS10060 Ppro_2027 WP_011735901.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

40% id,
20% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

40% id,
13% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

33% id,
10% cov

PPRO_RS11690 Ppro_2359 WP_011736222.1: shikimate dehydrogenase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

32% id,
18% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

31% id,
18% cov

aroL PPRO_RS11700 Ppro_2361 WP_011736224.1: shikimate kinase AroL
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

31% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory