Curated BLAST for Genomes

 

Curated BLAST

Searching in Pelobacter propionicus DSM 2379 (GCF_000015045.1)

Found 11 curated entries in PaperBLAST's database that match '4.1.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pelobacter propionicus DSM 2379, or try another query

trpC PPRO_RS03480 Ppro_0711 WP_011734654.1: indole-3-glycerol phosphate synthase TrpC
is similar to:
PaperBLAST

P84126: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermus thermophilus

47% id,
96% cov

trpC / Q9YGB5: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis
Q9YGB5: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis

41% id,
97% cov

A1KJ27: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
A5U2W7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
P9WFX7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis

41% id,
84% cov

More...

PPRO_RS07875 Ppro_1581 WP_011735486.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

50% id,
39% cov

guaA PPRO_RS09975 Ppro_2010 WP_011735884.1: glutamine-hydrolyzing GMP synthase
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

30% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory