Curated BLAST for Genomes

 

Curated BLAST

Searching in Psychromonas ingrahamii 37 (GCF_000015285.1)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Psychromonas ingrahamii 37, or try another query

prpC PING_RS09735 Ping_1868 WP_011770204.1: 2-methylcitrate synthase
is similar to:
PaperBLAST

PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis
SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis

73% id,
100% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

72% id,
99% cov

Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa

67% id,
99% cov

More...

PING_RS13510 Ping_2617 WP_011770893.1: citrate synthase
is similar to:
PaperBLAST

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

32% id,
98% cov

Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli

34% id,
93% cov

PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli
YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
prpC / GB|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli
prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli

33% id,
93% cov

More...

PING_RS11635 Ping_2257 WP_011770558.1: citrate synthase
is similar to:
PaperBLAST

P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis

33% id,
97% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

31% id,
97% cov

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

31% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory