Curated BLAST for Genomes

 

Curated BLAST

Searching in Polaromonas naphthalenivorans CJ2 (GCF_000015505.1)

Found 12 curated entries in PaperBLAST's database that match '3.5.4.19' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Polaromonas naphthalenivorans CJ2, or try another query

hisI PNAP_RS03475 Pnap_0702 WP_011800116.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HSERO_RS20310: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) from Herbaspirillum seropedicae

71% id,
74% cov

HIS3_METTH / O26347: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 from Methanothermobacter thermautotrophicus

45% id,
90% cov

Q8YH95: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) from Brucella melitensis

54% id,
70% cov

More...

hisD PNAP_RS03445 Pnap_0696 WP_011800110.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

36% id,
55% cov

PNAP_RS03480 Pnap_0703 WP_041376972.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

HIS2_ARATH / O82768: Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Protein HISTIDINE BIOSYNTHESIS 2; EC 3.5.4.19; EC 3.6.1.31 from Arabidopsis thaliana
At-IE / O82768: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19; EC 3.6.1.31) from Arabidopsis thaliana

37% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory