Curated BLAST for Genomes

 

Curated BLAST

Searching in Polaromonas naphthalenivorans CJ2 (GCF_000015505.1)

Found 23 curated entries in PaperBLAST's database that match '3.6.1.31' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Polaromonas naphthalenivorans CJ2, or try another query

PNAP_RS03480 Pnap_0703 WP_041376972.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

BPHYT_RS17670: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Burkholderia phytofirmans

68% id,
90% cov

HP15_3195: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Marinobacter adhaerens

50% id,
98% cov

Psest_3944: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas stutzeri

50% id,
96% cov

More...

hisI PNAP_RS03475 Pnap_0702 WP_011800116.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli

44% id,
62% cov

HIS2_ARATH / O82768: Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Protein HISTIDINE BIOSYNTHESIS 2; EC 3.5.4.19; EC 3.6.1.31 from Arabidopsis thaliana
At-IE / O82768: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19; EC 3.6.1.31) from Arabidopsis thaliana

43% id,
38% cov

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

39% id,
11% cov

hisD PNAP_RS03445 Pnap_0696 WP_011800110.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

36% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

748331-748723 (frame +2) on NC_008781.1 Polaromonas naphthalenivorans CJ2, complete sequence
is similar to:
PaperBLAST

BPHYT_RS17670: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Burkholderia phytofirmans
Also see hits to annotated proteins above

65% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory