Curated BLAST for Genomes

 

Curated BLAST

Searching in Polaromonas naphthalenivorans CJ2 (GCF_000015505.1)

Found 11 curated entries in PaperBLAST's database that match '5.1.99.1' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Polaromonas naphthalenivorans CJ2, or try another query

PNAP_RS11895 Pnap_2378 WP_011801763.1: VOC family protein
is similar to:
PaperBLAST

Dsui_0512: Methylmalonyl-CoA epimerase (EC 5.1.99.1) from Dechlorosoma suillum

85% id,
99% cov

MCE_PYRHO / O58010: Methylmalonyl-CoA epimerase; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 from Pyrococcus horikoshii

25% id,
93% cov

Msed_0639 / A4YEG2: methylmalonyl-CoA epimerase monomer (EC 5.1.99.1) from Metallosphaera sedula
A4YEG2: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Metallosphaera sedula

22% id,
98% cov

bphC PNAP_RS20655 Pnap_4146 WP_011797812.1: biphenyl-2,3-diol 1,2-dioxygenase
is similar to:
PaperBLAST

MCEE_HUMAN / Q96PE7: Methylmalonyl-CoA epimerase, mitochondrial; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 from Homo sapiens
MCEE / Q96PE7: methylmalonyl CoA epimerase (EC 5.1.99.1) from Homo sapiens

33% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory