Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Halorhodospira halophila SL1 (GCF_000015585.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Halorhodospira halophila SL1, or try another query

HHAL_RS00285 Hhal_0053 WP_011812871.1: DUF3683 domain-containing protein is similar to:	PaperBLAST
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae	55% id, 99% cov
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans	55% id, 92% cov
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans	62% id, 4% cov

HHAL_RS02895 Hhal_0569 WP_011813378.1: phosphoglycerate dehydrogenase is similar to:	PaperBLAST
PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis	28% id, 98% cov
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa	30% id, 89% cov
Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii	28% id, 95% cov
U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii	29% id, 90% cov
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli serA / RF\|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli	31% id, 82% cov
EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica	26% id, 88% cov
A4VGK3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas stutzeri	30% id, 78% cov
SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	26% id, 87% cov
P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis	34% id, 67% cov
SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	28% id, 81% cov
Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor	34% id, 65% cov
H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori	32% id, 68% cov
serA / GB\|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis	33% id, 64% cov
SERA_RAT / O08651: D-3-phosphoglycerate dehydrogenase; 3-PGDH; EC 1.1.1.95 from Rattus norvegicus Phgdh / O08651: 3-phosphoglycerate dehydrogenase subunit (EC 1.1.1.95) from Rattus norvegicus O08651: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Rattus norvegicus	34% id, 56% cov
SERA_MOUSE / Q61753: D-3-phosphoglycerate dehydrogenase; 3-PGDH; A10; EC 1.1.1.95 from Mus musculus Q61753: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mus musculus	33% id, 56% cov
Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis	28% id, 64% cov
SERA3_ARATH / Q9LT69: D-3-phosphoglycerate dehydrogenase 3, chloroplastic; EC 1.1.1.95 from Arabidopsis thaliana Q9LT69: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	37% id, 48% cov
SERA_HUMAN / O43175: D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens PHGDH / O43175: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens O43175: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens	32% id, 56% cov
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	28% id, 63% cov
SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	33% id, 50% cov
SERA1_ARATH / O49485: D-3-phosphoglycerate dehydrogenase 1, chloroplastic; Protein EMBRYO SAC DEVELOPMENT ARREST 9; EC 1.1.1.95 from Arabidopsis thaliana O49485: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	36% id, 47% cov
A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	37% id, 45% cov
A0A2R6X868: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Marchantia polymorpha	32% id, 51% cov
A0A1Z4EAX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	34% id, 45% cov
More...

HHAL_RS09975 Hhal_1974 WP_011814760.1: D-2-hydroxyacid dehydrogenase is similar to:	PaperBLAST
O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii	27% id, 98% cov
Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis	32% id, 82% cov
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa	28% id, 69% cov
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli serA / RF\|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli	27% id, 69% cov
A4VGK3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas stutzeri	27% id, 65% cov
SERA_HUMAN / O43175: D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens PHGDH / O43175: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens O43175: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens	30% id, 55% cov
SERA_MOUSE / Q61753: D-3-phosphoglycerate dehydrogenase; 3-PGDH; A10; EC 1.1.1.95 from Mus musculus Q61753: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mus musculus	30% id, 55% cov
SERA_RAT / O08651: D-3-phosphoglycerate dehydrogenase; 3-PGDH; EC 1.1.1.95 from Rattus norvegicus Phgdh / O08651: 3-phosphoglycerate dehydrogenase subunit (EC 1.1.1.95) from Rattus norvegicus O08651: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Rattus norvegicus	30% id, 55% cov
H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori	27% id, 60% cov
SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	26% id, 57% cov
SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	26% id, 57% cov
serA / GB\|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis	29% id, 48% cov
SERA1_ARATH / O49485: D-3-phosphoglycerate dehydrogenase 1, chloroplastic; Protein EMBRYO SAC DEVELOPMENT ARREST 9; EC 1.1.1.95 from Arabidopsis thaliana O49485: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	28% id, 49% cov
A0A1Z4EAX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	27% id, 45% cov
SERA3_ARATH / Q9LT69: D-3-phosphoglycerate dehydrogenase 3, chloroplastic; EC 1.1.1.95 from Arabidopsis thaliana Q9LT69: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	27% id, 45% cov
A0A2R6X868: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Marchantia polymorpha	27% id, 44% cov
SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	27% id, 43% cov
A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	29% id, 40% cov
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	23% id, 48% cov
More...

HHAL_RS00060 Hhal_0010 WP_011812828.1: D-2-hydroxyacid dehydrogenase is similar to:	PaperBLAST
Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii	28% id, 94% cov
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa	31% id, 80% cov
A4VGK3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas stutzeri	31% id, 70% cov
P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis	38% id, 56% cov
H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori	32% id, 63% cov
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli serA / RF\|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli	30% id, 66% cov
Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor	34% id, 54% cov
PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis	26% id, 69% cov
SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	28% id, 65% cov
SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	27% id, 65% cov
EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica	27% id, 66% cov
U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii	25% id, 69% cov
SERA_RAT / O08651: D-3-phosphoglycerate dehydrogenase; 3-PGDH; EC 1.1.1.95 from Rattus norvegicus Phgdh / O08651: 3-phosphoglycerate dehydrogenase subunit (EC 1.1.1.95) from Rattus norvegicus O08651: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Rattus norvegicus	34% id, 51% cov
SERA_HUMAN / O43175: D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens PHGDH / O43175: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens O43175: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens	34% id, 51% cov
serA / GB\|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis	31% id, 55% cov
SERA_MOUSE / Q61753: D-3-phosphoglycerate dehydrogenase; 3-PGDH; A10; EC 1.1.1.95 from Mus musculus Q61753: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mus musculus	33% id, 51% cov
SERA1_ARATH / O49485: D-3-phosphoglycerate dehydrogenase 1, chloroplastic; Protein EMBRYO SAC DEVELOPMENT ARREST 9; EC 1.1.1.95 from Arabidopsis thaliana O49485: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	33% id, 51% cov
SERA3_ARATH / Q9LT69: D-3-phosphoglycerate dehydrogenase 3, chloroplastic; EC 1.1.1.95 from Arabidopsis thaliana Q9LT69: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	31% id, 52% cov
A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	33% id, 49% cov
A0A2R6X868: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Marchantia polymorpha	33% id, 48% cov
A0A1Z4EAX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	32% id, 49% cov
SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	31% id, 49% cov
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	29% id, 43% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

9584-10624 (frame -1) on NC_008789.1 Halorhodospira halophila SL1, complete sequence is similar to:	PaperBLAST
Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii Also see hits to annotated proteins above	28% id, 97% cov
Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis Also see hits to annotated proteins above	26% id, 91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory