Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 5 curated entries in PaperBLAST's database that match '1.1.1.122' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS10070 Rsph17029_1995 WP_011841367.1: aldo/keto reductase
is similar to:
PaperBLAST

BPHYT_RS34225: L-fucose dehydrogenase (EC 1.1.1.122) from Burkholderia phytofirmans

46% id,
95% cov

FCDH_PSESP / Q52472: D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC 1.1.1.122 from Pseudomonas sp.
Q52472: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Pseudomonas sp.

42% id,
95% cov

RSPH17029_RS07595 Rsph17029_1501 WP_011841060.1: NAD(P)-dependent alcohol dehydrogenase
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

35% id,
97% cov

RSPH17029_RS19900 Rsph17029_3940 WP_002723784.1: aldo/keto reductase
is similar to:
PaperBLAST

FCDH_PSESP / Q52472: D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC 1.1.1.122 from Pseudomonas sp.
Q52472: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Pseudomonas sp.

26% id,
91% cov

tdh RSPH17029_RS05295 Rsph17029_1037 WP_009564818.1: L-threonine 3-dehydrogenase
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

24% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory