Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS12550 Rsph17029_2487 WP_011338523.1: alpha-hydroxy-acid oxidizing protein
is similar to:
PaperBLAST

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

66% id,
98% cov

Ac3H11_1623: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Acidovorax sp.

66% id,
98% cov

Q9I197: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

63% id,
99% cov

More...

glcF RSPH17029_RS13510 Rsph17029_2678 WP_011841820.1: glycolate oxidase subunit GlcF
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

28% id,
56% cov

rsxC RSPH17029_RS19865 Rsph17029_3933 WP_011842753.1: electron transport complex subunit RsxC
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

27% id,
26% cov

gltB RSPH17029_RS14150 Rsph17029_2807 WP_002721575.1: glutamate synthase large subunit
is similar to:
PaperBLAST

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

31% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory