Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 9 curated entries in PaperBLAST's database that match '1.2.1.18' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS08140 Rsph17029_1609 WP_011841128.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

SMc00781: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Sinorhizobium meliloti

73% id,
100% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

57% id,
98% cov

Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

57% id,
98% cov

More...

betB RSPH17029_RS04350 Rsph17029_0855 WP_009562902.1: betaine-aldehyde dehydrogenase
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

35% id,
97% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

34% id,
95% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

32% id,
96% cov

More...

RSPH17029_RS00810 Rsph17029_0157 WP_011840207.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

34% id,
98% cov

SMc00781: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Sinorhizobium meliloti

32% id,
96% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

33% id,
94% cov

More...

RSPH17029_RS05265 Rsph17029_1032 WP_011840756.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

35% id,
92% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

34% id,
94% cov

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

34% id,
93% cov

More...

RSPH17029_RS17490 Rsph17029_3472 WP_011842384.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

32% id,
99% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

31% id,
98% cov

Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

31% id,
99% cov

More...

RSPH17029_RS16005 Rsph17029_3176 WP_011842150.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

SMc00781: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Sinorhizobium meliloti

33% id,
95% cov

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

32% id,
97% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

32% id,
95% cov

More...

RSPH17029_RS14890 Rsph17029_2952 WP_011841984.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

31% id,
97% cov

Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

31% id,
94% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

30% id,
96% cov

More...

RSPH17029_RS13480 Rsph17029_2672 WP_011841815.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

31% id,
91% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

29% id,
95% cov

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

28% id,
98% cov

More...

putA RSPH17029_RS04265 Rsph17029_0838 WP_011840638.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:
PaperBLAST

Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

29% id,
86% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

28% id,
86% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

28% id,
86% cov

More...

RSPH17029_RS05060 Rsph17029_0992 WP_011840735.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

29% id,
83% cov

Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

28% id,
84% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

29% id,
82% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory