Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 21 curated entries in PaperBLAST's database that match '1.2.1.27' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS08140 Rsph17029_1609 WP_011841128.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

67% id,
97% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

57% id,
100% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

54% id,
100% cov

More...

RSPH17029_RS00810 Rsph17029_0157 WP_011840207.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

35% id,
97% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

33% id,
97% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

31% id,
99% cov

More...

betB RSPH17029_RS04350 Rsph17029_0855 WP_009562902.1: betaine-aldehyde dehydrogenase
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

35% id,
97% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

34% id,
96% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

34% id,
94% cov

More...

RSPH17029_RS05265 Rsph17029_1032 WP_011840756.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

35% id,
95% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

34% id,
93% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

33% id,
96% cov

More...

RSPH17029_RS16005 Rsph17029_3176 WP_011842150.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

34% id,
94% cov

PfGW456L13_5146: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

34% id,
94% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

33% id,
94% cov

More...

RSPH17029_RS17490 Rsph17029_3472 WP_011842384.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

31% id,
97% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

33% id,
92% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

30% id,
99% cov

More...

RSPH17029_RS13480 Rsph17029_2672 WP_011841815.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

31% id,
95% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

31% id,
95% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

30% id,
94% cov

More...

RSPH17029_RS14890 Rsph17029_2952 WP_011841984.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

30% id,
96% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

29% id,
97% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

30% id,
89% cov

More...

putA RSPH17029_RS04265 Rsph17029_0838 WP_011840638.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:
PaperBLAST

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

31% id,
87% cov

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

27% id,
85% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

26% id,
88% cov

RSPH17029_RS05060 Rsph17029_0992 WP_011840735.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

30% id,
85% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

28% id,
84% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

27% id,
85% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory