Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS10330 Rsph17029_2051 WP_011841405.1: Glu/Leu/Phe/Val dehydrogenase
is similar to:
PaperBLAST

P00366: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Bos taurus

44% id,
88% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

45% id,
86% cov

Q43314: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Arabidopsis thaliana

45% id,
83% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2174363-2175838 (frame -1) on NC_009049.1 Cereibacter sphaeroides ATCC 17029 chromosome 1, complete sequence
is similar to:
PaperBLAST

P00366: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Bos taurus
Also see hits to annotated proteins above

44% id,
92% cov

Q0E5H9: glutamate dehydrogenase (EC 1.4.1.2) from Halobacillus halophilus
Also see hits to annotated proteins above

36% id,
82% cov

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum
Also see hits to annotated proteins above

29% id,
86% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory