Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 6 curated entries in PaperBLAST's database that match '2.7.1.229' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

rbsK RSPH17029_RS17480 Rsph17029_3470 WP_011339573.1: ribokinase
is similar to:
PaperBLAST

DEOK_SALTI / P0DX97: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi
DEOK_SALTY / Q7CPF5: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium
deoK / Q8XGW5: deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi

54% id,
98% cov

RSPH17029_RS14505 Rsph17029_2877 WP_011841936.1: ribokinase
is similar to:
PaperBLAST

DEOK_SALTI / P0DX97: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi
DEOK_SALTY / Q7CPF5: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium
deoK / Q8XGW5: deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi

31% id,
97% cov

RSPH17029_RS17265 Rsph17029_3427 WP_011842355.1: ribokinase
is similar to:
PaperBLAST

DEOK_SALTI / P0DX97: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi
DEOK_SALTY / Q7CPF5: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium
deoK / Q8XGW5: deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi

25% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory