Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.58' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS18270 Rsph17029_3614 WP_160148006.1: 2-dehydro-3-deoxygalactonokinase
is similar to:
PaperBLAST

DGOK_RHIME / Q92RN7: Probable 2-dehydro-3-deoxygalactonokinase DgoK1; 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase; EC 2.7.1.58 from Rhizobium meliloti

43% id,
96% cov

N515DRAFT_1233: 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Dyella japonica

38% id,
94% cov

HSERO_RS05160: 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Herbaspirillum seropedicae

36% id,
93% cov

More...

RSPH17029_RS00195 Rsph17029_0038 WP_011840127.1: 2-dehydro-3-deoxygalactonokinase
is similar to:
PaperBLAST

DGOK_RHIME / Q92RN7: Probable 2-dehydro-3-deoxygalactonokinase DgoK1; 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase; EC 2.7.1.58 from Rhizobium meliloti

43% id,
97% cov

N515DRAFT_1233: 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Dyella japonica

39% id,
97% cov

BPHYT_RS16950: 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) from Burkholderia phytofirmans

39% id,
91% cov

More...

rbsK RSPH17029_RS17480 Rsph17029_3470 WP_011339573.1: ribokinase
is similar to:
PaperBLAST

KDGK2_HALVD / D4GR05: 2-dehydro-3-deoxygalactonokinase; 2-keto-3-deoxygalactonate kinase; KDGal kinase; KDGK-2; EC 2.7.1.58 from Haloferax volcanii
D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

29% id,
97% cov

RSPH17029_RS05145 Rsph17029_1009 WP_011337406.1: 1-phosphofructokinase family hexose kinase
is similar to:
PaperBLAST

KDGK2_HALVD / D4GR05: 2-dehydro-3-deoxygalactonokinase; 2-keto-3-deoxygalactonate kinase; KDGal kinase; KDGK-2; EC 2.7.1.58 from Haloferax volcanii
D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

33% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory