Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 9 curated entries in PaperBLAST's database that match '4.2.1.40' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

dgoD RSPH17029_RS18320 Rsph17029_3624 WP_011842510.1: galactonate dehydratase
is similar to:
PaperBLAST

GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
YgcX / b2787: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli
gudD / RF|NP_417267: glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
gudD / P0AES2: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli

24% id,
68% cov

RSPH17029_RS15265 Rsph17029_3030 WP_011842032.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
YgcX / b2787: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli
gudD / RF|NP_417267: glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
gudD / P0AES2: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli

27% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory