Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.68' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS01345 Rsph17029_0264 WP_011840277.1: altronate dehydratase family protein
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

35% id,
93% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

39% id,
72% cov

RSPH17029_RS18315 Rsph17029_3623 WP_011842509.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

HSERO_RS05235: L-fuconate dehydratase (EC 4.2.1.68) from Herbaspirillum seropedicae

22% id,
91% cov

RSPH17029_RS15265 Rsph17029_3030 WP_011842032.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

26% id,
70% cov

HSERO_RS05235: L-fuconate dehydratase (EC 4.2.1.68) from Herbaspirillum seropedicae

26% id,
69% cov

RSPH17029_RS20915 Rsph17029_4153 WP_011840078.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

31% id,
49% cov

RSPH17029_RS18080 Rsph17029_3574 WP_011842465.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

25% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory