Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 11 curated entries in PaperBLAST's database that match '4.2.1.90' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS01345 Rsph17029_0264 WP_011840277.1: altronate dehydratase family protein
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

35% id,
93% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

39% id,
72% cov

RSPH17029_RS18080 Rsph17029_3574 WP_011842465.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

29% id,
84% cov

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

28% id,
83% cov

RHMD_SALTY / Q8ZNF9: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium
Q8ZNF9: L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica

27% id,
82% cov

More...

RSPH17029_RS20915 Rsph17029_4153 WP_011840078.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

27% id,
83% cov

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

25% id,
80% cov

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

29% id,
65% cov

dgoD RSPH17029_RS18320 Rsph17029_3624 WP_011842510.1: galactonate dehydratase
is similar to:
PaperBLAST

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

31% id,
65% cov

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

29% id,
66% cov

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

30% id,
61% cov

More...

RSPH17029_RS20930 Rsph17029_4156 WP_011840081.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

24% id,
65% cov

RSPH17029_RS18315 Rsph17029_3623 WP_011842509.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

29% id,
36% cov

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

31% id,
33% cov

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

36% id,
27% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory