Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 31 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

ilvA RSPH17029_RS14480 Rsph17029_2872 WP_009563248.1: threonine ammonia-lyase IlvA
is similar to:		 PaperBLAST

CA265_RS15860: threonine deaminase (EC 4.3.1.19) from Pedobacter sp.

 50% id,
97% cov

A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis

 46% id,
92% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

 44% id,
95% cov

More...

RSPH17029_RS04715 Rsph17029_0926 WP_011840691.1: threonine/serine dehydratase
is similar to:		 PaperBLAST

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / RF|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

 37% id,
92% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

 36% id,
93% cov

CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus

 38% id,
78% cov

More...

trpB RSPH17029_RS16460 Rsph17029_3270 WP_002724529.1: tryptophan synthase subunit beta
is similar to:		 PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

 27% id,
69% cov

RSPH17029_RS13980 Rsph17029_2771 WP_011338724.1: pyridoxal-phosphate dependent enzyme
is similar to:		 PaperBLAST

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

 28% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

951813-953048 (frame -3) on NC_009049.1 Cereibacter sphaeroides ATCC 17029 chromosome 1, complete sequence
is similar to:		 PaperBLAST

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / RF|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
Also see hits to annotated proteins above

 37% id,
94% cov

A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis
Also see hits to annotated proteins above

 33% id,
77% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum
Also see hits to annotated proteins above

 30% id,
79% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory