Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

tpiA RSPH17029_RS03035 Rsph17029_0598 WP_011840459.1: triose-phosphate isomerase
is similar to:		 PaperBLAST

TPIS_BARHE / Q8L1Z5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae
Q8L1Z5: triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae

 55% id,
94% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

 48% id,
100% cov

TPIS_DROME / P29613: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Drosophila melanogaster

 46% id,
98% cov

More...

RSPH17029_RS05860 Rsph17029_1152 WP_011840836.1: phosphoglycerate kinase
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 49% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory