Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 6 curated entries in PaperBLAST's database that match 'D-alanine%dehydrogenase' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

RSPH17029_RS19415 Rsph17029_3842 WP_011842694.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

64% id,
98% cov

DADA1_PSEAE / Q9HTQ0: D-amino acid dehydrogenase 1; D-alanine dehydrogenase 1; EC 1.4.99.- from Pseudomonas aeruginosa

59% id,
99% cov

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

60% id,
96% cov

More...

RSPH17029_RS05050 Rsph17029_0990 WP_011840733.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

27% id,
95% cov

RSPH17029_RS10235 Rsph17029_2032 WP_011841395.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

Ac3H11_4848: D-alanine dehydrogenase (EC 1.4.99.-) from Acidovorax sp.

24% id,
36% cov

RSPH17029_RS07320 Rsph17029_1447 WP_011841021.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

DADA_KLEAE / O30745: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Klebsiella aerogenes

40% id,
13% cov

DADA_ECOLI / P0A6J5: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Escherichia coli

40% id,
13% cov

RSPH17029_RS16355 Rsph17029_3249 WP_011842211.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

DADA1_PSEAE / Q9HTQ0: D-amino acid dehydrogenase 1; D-alanine dehydrogenase 1; EC 1.4.99.- from Pseudomonas aeruginosa

32% id,
16% cov

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

42% id,
10% cov

crtI RSPH17029_RS09645 Rsph17029_1910 WP_011841318.1: phytoene desaturase
is similar to:
PaperBLAST

DADA_ECOLI / P0A6J5: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Escherichia coli

38% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory