Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanococcus maripaludis C5 (GCF_000016125.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanococcus maripaludis C5, or try another query

MMARC5_RS07000 MmarC5_1378 WP_011869127.1: homoserine kinase
is similar to:
PaperBLAST

KHSE_METMP / Q6M0H5: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Methanococcus maripaludis

95% id,
100% cov

thrB / Q58504: homoserine kinase monomer (EC 2.7.1.39) from Methanocaldococcus jannaschii

59% id,
99% cov

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

36% id,
99% cov

More...

MMARC5_RS06880 MmarC5_1354 WP_011869103.1: shikimate kinase
is similar to:
PaperBLAST

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

22% id,
87% cov

KHSE_ARATH / Q8L7R2: Homoserine kinase; Protein DOWNY MILDEW RESISTANT 1; EC 2.7.1.39 from Arabidopsis thaliana
hsk / Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana
Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana

28% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory