Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanococcus maripaludis C5 (GCF_000016125.1)

Found 3 curated entries in PaperBLAST's database that match 'anthranilate synthase component II' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methanococcus maripaludis C5, or try another query

MMARC5_RS02985 MmarC5_0589 WP_011868357.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

42% id,
97% cov

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

41% id,
97% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

37% id,
99% cov

MMARC5_RS00685 MmarC5_0133 WP_011867910.1: GMP synthase subunit A
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

31% id,
95% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

30% id,
96% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

28% id,
98% cov

carA MMARC5_RS09355 MmarC5_1820 WP_011869562.1: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

26% id,
87% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

25% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory