Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum centenum SW SW; ATCC 51521 (GCF_000016185.1)

Found 15 curated entries in PaperBLAST's database that match '2.6.1.27' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Rhodospirillum centenum SW SW; ATCC 51521, or try another query

RC1_RS09070 RC1_1891 WP_012567072.1: branched-chain amino acid aminotransferase
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

39% id,
94% cov

RC1_RS00590 RC1_0133 WP_012565373.1: D-amino-acid transaminase
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

26% id,
92% cov

RC1_RS14380 RC1_3007 WP_012568155.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ISS1_ARATH / Q9C969: Aromatic aminotransferase ISS1; Methionine aminotransferase ISS1; Phenylalanine aminotransferase ISS1; Protein INDOLE SEVERE SENSITIVE 1; Protein REVERSAL OF SAV3 PHENOTYPE 1; Tryptophan aminotransferase ISS1; Tyrosine aminotransferase ISS1; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.88 from Arabidopsis thaliana
ISS1 / Q9C969: aromatic aminotransferase ISS1 (EC 2.6.1.27) from Arabidopsis thaliana

29% id,
82% cov

RC1_RS17510 RC1_3661 WP_012568785.1: aminotransferase
is similar to:
PaperBLAST

ISS1_ARATH / Q9C969: Aromatic aminotransferase ISS1; Methionine aminotransferase ISS1; Phenylalanine aminotransferase ISS1; Protein INDOLE SEVERE SENSITIVE 1; Protein REVERSAL OF SAV3 PHENOTYPE 1; Tryptophan aminotransferase ISS1; Tyrosine aminotransferase ISS1; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.88 from Arabidopsis thaliana
ISS1 / Q9C969: aromatic aminotransferase ISS1 (EC 2.6.1.27) from Arabidopsis thaliana

26% id,
92% cov

RC1_RS13315 RC1_2784 WP_012567937.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

24% id,
72% cov

cobD RC1_RS18535 RC1_3874 WP_012568990.1: threonine-phosphate decarboxylase CobD
is similar to:
PaperBLAST

ISS1_ARATH / Q9C969: Aromatic aminotransferase ISS1; Methionine aminotransferase ISS1; Phenylalanine aminotransferase ISS1; Protein INDOLE SEVERE SENSITIVE 1; Protein REVERSAL OF SAV3 PHENOTYPE 1; Tryptophan aminotransferase ISS1; Tyrosine aminotransferase ISS1; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.88 from Arabidopsis thaliana
ISS1 / Q9C969: aromatic aminotransferase ISS1 (EC 2.6.1.27) from Arabidopsis thaliana

32% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory