Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum centenum SW SW; ATCC 51521 (GCF_000016185.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Rhodospirillum centenum SW SW; ATCC 51521, or try another query

RC1_RS09070 RC1_1891 WP_012567072.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

Psest_0450: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Pseudomonas stutzeri

 44% id,
96% cov

ilvE / O86428: branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Pseudomonas aeruginosa
O86428: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Pseudomonas aeruginosa

 43% id,
95% cov

BPHYT_RS16285: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Burkholderia phytofirmans

 43% id,
95% cov

More...

RC1_RS02695 RC1_0573 WP_012565800.1: aminotransferase class IV
is similar to:		 PaperBLAST

A0A1B1L2T7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Bacillus thuringiensis

 37% id,
85% cov

GB|AAU18968.1: branched-chain amino acid aminotransferase 2; EC 2.6.1.42 from Bacillus cereus

 37% id,
85% cov

ilvE / A6UWA0: branched-chain amino acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Methanococcus aeolicus
A6UWA0: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Methanococcus aeolicus

 35% id,
87% cov

More...

RC1_RS04740 RC1_0999 WP_012566212.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 30% id,
98% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 25% id,
99% cov

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 26% id,
89% cov

RC1_RS06235 RC1_1306 WP_012566498.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 31% id,
90% cov

RC1_RS00590 RC1_0133 WP_012565373.1: D-amino-acid transaminase
is similar to:		 PaperBLAST

GB|AAU18968.1: branched-chain amino acid aminotransferase 2; EC 2.6.1.42 from Bacillus cereus

 29% id,
92% cov

A0A1B1L2T7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Bacillus thuringiensis

 29% id,
92% cov

B9L0B7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermomicrobium roseum

 28% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory