Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum centenum SW SW; ATCC 51521 (GCF_000016185.1)

Found 60 curated entries in PaperBLAST's database that match '2.7.2.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Rhodospirillum centenum SW SW; ATCC 51521, or try another query

RC1_RS12695 RC1_2646 WP_012567802.1: aspartate kinase
is similar to:
PaperBLAST

AKLYS_STUS1 / A4VJB4: Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 from Stutzerimonas stutzeri

58% id,
98% cov

AK_PSEFS / C3JXY0: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas fluorescens

57% id,
98% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

57% id,
98% cov

More...

RC1_RS06230 RC1_1305 WP_012566497.1: homoserine dehydrogenase
is similar to:
PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

35% id,
55% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

26% id,
43% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

28% id,
29% cov

lysA RC1_RS19620 RC1_4101 WP_012569212.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

35% id,
43% cov

pyrH RC1_RS05760 RC1_1206 WP_012566408.1: UMP kinase
is similar to:
PaperBLAST

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

26% id,
55% cov

AK_PSEFS / C3JXY0: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas fluorescens

26% id,
56% cov

AKLYS_STUS1 / A4VJB4: Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 from Stutzerimonas stutzeri

27% id,
50% cov

More...

proB RC1_RS02100 RC1_0445 WP_012565676.1: glutamate 5-kinase
is similar to:
PaperBLAST

dapG: aspartate kinase 1; EC 2.7.2.4 from Bacillus subtilis

26% id,
55% cov

dapG / Q04795: aspartokinase I (alpha and beta subunits) (EC 2.7.2.4) from Bacillus subtilis

26% id,
55% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

28% id,
49% cov

More...

RC1_RS04820 RC1_1016 WP_012566228.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

32% id,
45% cov

RC1_RS14390 RC1_3009 WP_012568157.1: type III PLP-dependent enzyme
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

27% id,
41% cov

argB RC1_RS10975 RC1_2288 WP_012567460.1: acetylglutamate kinase
is similar to:
PaperBLAST

P74569: aspartate kinase (EC 2.7.2.4) from Synechocystis sp.

24% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory