Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum centenum SW SW; ATCC 51521 (GCF_000016185.1)

Found 23 curated entries in PaperBLAST's database that match '3.6.1.31' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhodospirillum centenum SW SW; ATCC 51521, or try another query

RC1_RS15795 RC1_3300 WP_012568440.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

AZOBR_RS01690: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Azospirillum brasilense

68% id,
89% cov

Ga0059261_1051: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Sphingomonas koreensis

53% id,
93% cov

CCNA_03854: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Caulobacter crescentus

47% id,
95% cov

More...

mazG RC1_RS00625 RC1_0140 WP_012565380.1: nucleoside triphosphate pyrophosphohydrolase
is similar to:
PaperBLAST

Q72CU7: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris
DVU1186: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris

38% id,
96% cov

hisI RC1_RS05465 RC1_1146 WP_012566351.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli

44% id,
48% cov

HIS2_ARATH / O82768: Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Protein HISTIDINE BIOSYNTHESIS 2; EC 3.5.4.19; EC 3.6.1.31 from Arabidopsis thaliana
At-IE / O82768: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19; EC 3.6.1.31) from Arabidopsis thaliana

39% id,
39% cov

HIS2_SCHPO / O59667: Histidine biosynthesis bifunctional protein his7; EC 3.5.4.19; EC 3.6.1.31 from Schizosaccharomyces pombe
his7 / GI|3006138: phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase His7; EC 3.5.4.19; EC 3.6.1.31 from Schizosaccharomyces pombe

40% id,
22% cov

More...

hisD RC1_RS07905 RC1_1650 WP_012566836.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

37% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3397037-3398347 (frame +2) on NC_011420.2 Rhodospirillum centenum SW, complete sequence
is similar to:
PaperBLAST

AZOBR_RS01690: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Azospirillum brasilense
Also see hits to annotated proteins above

68% id,
95% cov

BPHYT_RS17670: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Burkholderia phytofirmans
Also see hits to annotated proteins above

42% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory