Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum centenum SW SW; ATCC 51521 (GCF_000016185.1)

Found 22 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Rhodospirillum centenum SW SW; ATCC 51521, or try another query

gcvH RC1_RS17495 RC1_3657 WP_012568782.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

PfGW456L13_1869: glycine cleavage system H protein (EC 1.4.1.27) from Pseudomonas fluorescens

56% id,
94% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

53% id,
92% cov

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

49% id,
93% cov

More...

RC1_RS16900 RC1_3531 WP_012568666.1: biotin carboxylase N-terminal domain-containing protein
is similar to:
PaperBLAST

GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae

37% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory