Curated BLAST for Genomes

 

Curated BLAST

Searching in Clostridium kluyveri DSM 555 (GCF_000016505.1)

Found 15 curated entries in PaperBLAST's database that match '1.2.1.22' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Clostridium kluyveri DSM 555, or try another query

CKL_RS10825 CKL_2209 WP_012102549.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

LADH_METJA / Q58806: Lactaldehyde dehydrogenase; EC 1.2.1.22 from Methanocaldococcus jannaschii
MJ1411 / Q58806: lactaldehyde dehydrogenase subunit (EC 1.2.1.22) from Methanocaldococcus jannaschii
Q58806: lactaldehyde dehydrogenase (EC 1.2.1.22) from Methanocaldococcus jannaschii

27% id,
95% cov

ladh / C1DMY3: NAD+-dependent L-lactaldehyde dehydrogenase (EC 1.2.1.22) from Azotobacter vinelandii

32% id,
69% cov

Q97UA1: lactaldehyde dehydrogenase (EC 1.2.1.22); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Saccharolobus solfataricus

30% id,
66% cov

More...

adhE CKL_RS07930 CKL_1614 WP_012102009.1: bifunctional acetaldehyde-CoA/alcohol dehydrogenase
is similar to:
PaperBLAST

ALDA_ECOLI / P25553: Lactaldehyde dehydrogenase; Aldehyde dehydrogenase A; Glycolaldehyde dehydrogenase; EC 1.2.1.22; EC 1.2.1.21 from Escherichia coli
Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
P25553: lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) from Escherichia coli

22% id,
85% cov

LADH_METJA / Q58806: Lactaldehyde dehydrogenase; EC 1.2.1.22 from Methanocaldococcus jannaschii
MJ1411 / Q58806: lactaldehyde dehydrogenase subunit (EC 1.2.1.22) from Methanocaldococcus jannaschii
Q58806: lactaldehyde dehydrogenase (EC 1.2.1.22) from Methanocaldococcus jannaschii

21% id,
87% cov

Q97UA1: lactaldehyde dehydrogenase (EC 1.2.1.22); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Saccharolobus solfataricus

20% id,
88% cov

CKL_RS05295 CKL_1076 WP_012101452.1: acetaldehyde dehydrogenase (acetylating)
is similar to:
PaperBLAST

ladh / C1DMY3: NAD+-dependent L-lactaldehyde dehydrogenase (EC 1.2.1.22) from Azotobacter vinelandii

22% id,
55% cov

fabG CKL_RS00520 CKL_0106 WP_011988702.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

Echvi_1572: Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis

31% id,
36% cov

rhaEW / P40747: bifunctional L-rhamnulose 1-phosphate aldolase/lactaldehyde dehydrogenase (EC 4.1.2.19; EC 1.2.1.22) from Bacillus subtilis

29% id,
38% cov

SMc02322: rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Sinorhizobium meliloti

28% id,
37% cov

CKL_RS03830 CKL_0780 WP_011989348.1: SDR family oxidoreductase
is similar to:
PaperBLAST

Echvi_1572: Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis

29% id,
37% cov

SMc02322: rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Sinorhizobium meliloti

28% id,
37% cov

CKL_RS03315 CKL_0675 WP_011989243.1: SDR family oxidoreductase
is similar to:
PaperBLAST

Echvi_1572: Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis

28% id,
36% cov

rhaEW / A9WGG0: bifunctional L-rhamnulose-phosphate aldolase/L-lactaldehyde dehydrogenase (EC 1.2.1.22; EC 4.1.2.19) from Chloroflexus aurantiacus

26% id,
39% cov

SMc02322: rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Sinorhizobium meliloti

26% id,
37% cov

More...

CKL_RS07515 CKL_1525 WP_012101917.1: non-ribosomal peptide synthetase
is similar to:
PaperBLAST

rhaEW / P40747: bifunctional L-rhamnulose 1-phosphate aldolase/lactaldehyde dehydrogenase (EC 4.1.2.19; EC 1.2.1.22) from Bacillus subtilis

27% id,
35% cov

rhaEW / A9WGG0: bifunctional L-rhamnulose-phosphate aldolase/L-lactaldehyde dehydrogenase (EC 1.2.1.22; EC 4.1.2.19) from Chloroflexus aurantiacus

23% id,
35% cov

Echvi_1572: Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis

30% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1688296-1690947 (frame +1) on NC_009706.1 Clostridium kluyveri DSM 555, complete sequence
is similar to:
PaperBLAST

ALDA_ECOLI / P25553: Lactaldehyde dehydrogenase; Aldehyde dehydrogenase A; Glycolaldehyde dehydrogenase; EC 1.2.1.22; EC 1.2.1.21 from Escherichia coli
Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
P25553: lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) from Escherichia coli
Also see hits to annotated proteins above

22% id,
87% cov

95456-96220 (frame +2) on NC_009706.1 Clostridium kluyveri DSM 555, complete sequence
is similar to:
PaperBLAST

Echvi_1572: Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis
Also see hits to annotated proteins above

30% id,
38% cov

SMc02322: rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Sinorhizobium meliloti
Also see hits to annotated proteins above

27% id,
38% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory