Curated BLAST for Genomes

 

Curated BLAST

Searching in Clostridium kluyveri DSM 555 (GCF_000016505.1)

Found 51 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Clostridium kluyveri DSM 555, or try another query

CKL_RS10110 CKL_2060 WP_041700808.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

45% id,
74% cov

O59088: proline dehydrogenase (subunit 2/2) (EC 1.5.5.2) from Pyrococcus horikoshii

25% id,
57% cov

CKL_RS10095 CKL_2057 WP_012102394.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

Q5JFG2: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

29% id,
100% cov

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

29% id,
100% cov

lpdA CKL_RS11120 CKL_2268 WP_012102610.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
84% cov

CKL_RS02190 CKL_0443 WP_011989012.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

30% id,
66% cov

ahpF CKL_RS01790 CKL_0362 WP_011988931.1: alkyl hydroperoxide reductase subunit F
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
65% cov

lpdA CKL_RS08690 CKL_1769 WP_012102164.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
65% cov

CKL_RS02915 CKL_0591 WP_011989160.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

29% id,
52% cov

CKL_RS12595 CKL_2573 WP_012102915.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

24% id,
60% cov

CKL_RS00080 CKL_0016 WP_011988624.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

27% id,
53% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

24% id,
53% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

22% id,
51% cov

More...

CKL_RS10825 CKL_2209 WP_012102549.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

25% id,
41% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

24% id,
41% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

25% id,
39% cov

More...

CKL_RS08300 CKL_1689 WP_012102085.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
34% cov

CKL_RS10115 CKL_2061 WP_242649493.1: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

43% id,
20% cov

CKL_RS07695 CKL_1565 WP_012101957.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

31% id,
27% cov

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

49% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory