Curated BLAST for Genomes

 

Curated BLAST

Searching in Clostridium kluyveri DSM 555 (GCF_000016505.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Clostridium kluyveri DSM 555, or try another query

thrB CKL_RS04215 CKL_0860 WP_011989422.1: homoserine kinase
is similar to:
PaperBLAST

thrB / Q58504: homoserine kinase monomer (EC 2.7.1.39) from Methanocaldococcus jannaschii

32% id,
100% cov

KHSE_METMP / Q6M0H5: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Methanococcus maripaludis

33% id,
94% cov

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum

31% id,
96% cov

More...

CKL_RS03880 CKL_0791 WP_011989359.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

29% id,
77% cov

ispE CKL_RS18125 CKL_3724 WP_012104043.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

ABZR86_RS15980: homoserine kinase (EC 2.7.1.39) from Dyella japonica

22% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory