Curated BLAST for Genomes

 

Curated BLAST

Searching in Clostridium kluyveri DSM 555 (GCF_000016505.1)

Found 22 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Clostridium kluyveri DSM 555, or try another query

gcvH CKL_RS08710 CKL_1773 WP_012102168.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus

56% id,
100% cov

GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis

53% id,
100% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

50% id,
99% cov

More...

CKL_RS04185 CKL_0854 WP_011989416.1: SLBB domain-containing protein
is similar to:
PaperBLAST

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

30% id,
51% cov

CKL_RS04195 CKL_0856 WP_011989418.1: SLBB domain-containing protein
is similar to:
PaperBLAST

GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis

39% id,
31% cov

CKL_RS04175 CKL_0852 WP_012620255.1: SLBB domain-containing protein
is similar to:
PaperBLAST

GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis

39% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory