Curated BLAST for Genomes

 

Curated BLAST

Searching in Geotalea uraniireducens Rf4 (GCF_000016745.1)

Found 8 curated entries in PaperBLAST's database that match '1.3.8.6' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Geotalea uraniireducens Rf4, or try another query

GURA_RS16870 Gura_3313 WP_011940133.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

36% id,
96% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

36% id,
96% cov

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

33% id,
93% cov

More...

GURA_RS15455 Gura_3036 WP_011939875.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

32% id,
93% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

31% id,
95% cov

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

32% id,
91% cov

More...

GURA_RS15475 Gura_3040 WP_041245493.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

32% id,
94% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

31% id,
94% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

30% id,
94% cov

More...

GURA_RS11950 Gura_2352 WP_011939224.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

31% id,
94% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

30% id,
94% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

29% id,
95% cov

More...

GURA_RS08105 Gura_1593 WP_011938499.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

29% id,
96% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

29% id,
96% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

28% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory