Curated BLAST for Genomes

 

Curated BLAST

Searching in Geotalea uraniireducens Rf4 (GCF_000016745.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Geotalea uraniireducens Rf4, or try another query

GURA_RS09225 Gura_1819 WP_011938714.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

29% id,
86% cov

ispE GURA_RS18760 Gura_3683 WP_011940489.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

26% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory