Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 1 curated entries in PaperBLAST's database that match '1.3.99.10' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 26 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

SWIT_RS10910 Swit_2161 WP_011952997.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

54% id,
87% cov

SWIT_RS10095 Swit_1998 WP_011952836.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

36% id,
89% cov

SWIT_RS11400 Swit_2252 WP_012048468.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

35% id,
87% cov

SWIT_RS08080 Swit_1598 WP_011952439.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

38% id,
80% cov

SWIT_RS18220 Swit_3603 WP_012049788.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

35% id,
87% cov

SWIT_RS09275 Swit_1836 WP_011952674.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

33% id,
92% cov

SWIT_RS08910 Swit_1764 WP_011952604.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

34% id,
88% cov

SWIT_RS03310 Swit_0650 WP_011951498.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

33% id,
89% cov

SWIT_RS21415 Swit_4233 WP_041379366.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

32% id,
90% cov

SWIT_RS04195 Swit_0824 WP_011951671.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

36% id,
79% cov

SWIT_RS04185 Swit_0822 WP_011951669.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

32% id,
88% cov

SWIT_RS07440 Swit_1469 WP_011952311.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

29% id,
94% cov

SWIT_RS09305 Swit_1842 WP_226952242.1: acyl-CoA/acyl-ACP dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

31% id,
85% cov

SWIT_RS08105 Swit_1603 WP_011952444.1: acyl-CoA/acyl-ACP dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

30% id,
85% cov

SWIT_RS18345 Swit_3628 WP_012049813.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

27% id,
89% cov

SWIT_RS16745 Swit_3317 WP_012049507.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

27% id,
86% cov

SWIT_RS09345 Swit_1850 WP_011952688.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

29% id,
79% cov

SWIT_RS18370 Swit_3633 WP_012049818.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

28% id,
79% cov

SWIT_RS01585 Swit_0317 WP_011951168.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

27% id,
80% cov

SWIT_RS16530 Swit_3274 WP_012049464.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

29% id,
72% cov

SWIT_RS16755 Swit_3319 WP_012049509.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

25% id,
79% cov

SWIT_RS08745 Swit_1731 WP_011952572.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

29% id,
66% cov

SWIT_RS01880 Swit_0376 WP_011951227.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

26% id,
54% cov

SWIT_RS16535 Swit_3275 WP_012049465.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

30% id,
36% cov

SWIT_RS09350 Swit_1851 WP_011952689.1: acyl-CoA/acyl-ACP dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

32% id,
30% cov

SWIT_RS17160 Swit_3398 WP_012049586.1: acyl-CoA/acyl-ACP dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

33% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 29 reading frames. Except for 5 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1128035-1129285 (frame -3) on NC_009511.1 Rhizorhabdus wittichii RW1, complete sequence
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans
Also see hits to annotated proteins above

33% id,
97% cov

915349-916683 (frame -1) on NC_009511.1 Rhizorhabdus wittichii RW1, complete sequence
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans
Also see hits to annotated proteins above

33% id,
96% cov

1619582-1621306 (frame -3) on NC_009511.1 Rhizorhabdus wittichii RW1, complete sequence
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans
Also see hits to annotated proteins above

29% id,
96% cov

2068233-2071595 (frame +3) on NC_009511.1 Rhizorhabdus wittichii RW1, complete sequence
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans
Also see hits to annotated proteins above

28% id,
96% cov

3649984-3651207 (frame +1) on NC_009511.1 Rhizorhabdus wittichii RW1, complete sequence
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans
Also see hits to annotated proteins above

26% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory