Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

prpC SWIT_RS24200 Swit_4790 WP_012050963.1: 2-methylcitrate synthase is similar to:	PaperBLAST
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	79% id, 97% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	80% id, 94% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	75% id, 96% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	74% id, 96% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	74% id, 96% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	55% id, 100% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	55% id, 100% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	55% id, 99% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	52% id, 100% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	41% id, 97% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	40% id, 98% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	37% id, 99% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	39% id, 93% cov
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	35% id, 99% cov
More...

SWIT_RS16220 Swit_3212 WP_012049403.1: citrate synthase is similar to:	PaperBLAST
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	35% id, 99% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	34% id, 97% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	33% id, 97% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	34% id, 94% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	35% id, 91% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	34% id, 91% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	34% id, 91% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	34% id, 90% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	31% id, 99% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	30% id, 99% cov
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	31% id, 97% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	30% id, 99% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	30% id, 98% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	31% id, 92% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory