Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

SWIT_RS03965 Swit_0778 WP_011951625.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

RR42_RS25890: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Cupriavidus basilensis

 64% id,
100% cov

Q5FTR3: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Gluconobacter oxydans

 60% id,
94% cov

ILVE_MYCS2 / A0R066: Branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 from Mycolicibacterium smegmatis
A0R066: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Mycolicibacterium smegmatis

 57% id,
98% cov

More...

SWIT_RS03890 Swit_0763 WP_011951610.1: aspartate/tyrosine/aromatic aminotransferase
is similar to:		 PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

 41% id,
100% cov

SWIT_RS20630 Swit_4079 WP_012050261.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

BPHYT_RS16285: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Burkholderia phytofirmans

 40% id,
96% cov

Psest_0450: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Pseudomonas stutzeri

 39% id,
97% cov

ilvE / O86428: branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Pseudomonas aeruginosa
O86428: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Pseudomonas aeruginosa

 38% id,
97% cov

More...

SWIT_RS21210 Swit_4192 WP_012050370.1: aspartate/tyrosine/aromatic aminotransferase
is similar to:		 PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

 36% id,
100% cov

SWIT_RS13665 Swit_2700 WP_012048908.1: aromatic amino acid transaminase
is similar to:		 PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

 35% id,
100% cov

SWIT_RS24030 Swit_4755 WP_012050928.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 29% id,
89% cov

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 24% id,
77% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 26% id,
71% cov

SWIT_RS04400 Swit_0864 WP_011951711.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 28% id,
91% cov

SWIT_RS21965 Swit_4344 WP_041379379.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 29% id,
85% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 26% id,
82% cov

SWIT_RS13995 Swit_2764 WP_012048971.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 30% id,
81% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 24% id,
94% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 25% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory