Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 5 curated entries in PaperBLAST's database that match '2.6.1.66' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

SWIT_RS12735 Swit_2514 WP_012048726.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

47% id,
97% cov

SWIT_RS23865 Swit_4725 WP_012050898.1: aminotransferase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

31% id,
90% cov

SWIT_RS17960 Swit_3551 WP_012049736.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

30% id,
90% cov

SWIT_RS12245 Swit_2419 WP_012048634.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

26% id,
98% cov

AVTA_ECOLI / P09053: Valine--pyruvate aminotransferase; Alanine--valine transaminase; Transaminase C; EC 2.6.1.66 from Escherichia coli
AvtA / b3572: valine—pyruvate aminotransferase (EC 2.6.1.66) from Escherichia coli
avtA / P09053: valine—pyruvate aminotransferase (EC 2.6.1.66) from Escherichia coli
P09053: valine-pyruvate transaminase (EC 2.6.1.66) from Escherichia coli

28% id,
32% cov

hisC SWIT_RS21740 Swit_4299 WP_012050477.1: histidinol-phosphate transaminase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

26% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory