Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 12 curated entries in PaperBLAST's database that match '2.7.1.178' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

SWIT_RS09545 Swit_1890 WP_011952728.1: sugar kinase
is similar to:
PaperBLAST

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

44% id,
97% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

43% id,
97% cov

SWIT_RS08585 Swit_1699 WP_049771195.1: sugar kinase
is similar to:
PaperBLAST

kdgK / Q9WXS2: 2-keto-3-deoxygluconate kinase (EC 2.7.1.178) from Thermotoga maritima

37% id,
96% cov

KDGK1_HALVD / D4GSE6: 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase; 2-dehydro-3-deoxyglucono/galactono-kinase; 2-keto-3-deoxygluconate/2-keto-3-deoxygalactonate kinase; KDG kinase; KDGK-1; EC 2.7.1.178 from Haloferax volcanii
D4GSE6: 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Haloferax volcanii

34% id,
95% cov

D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

33% id,
63% cov

More...

SWIT_RS13045 Swit_2568 WP_012048779.1: adenosine kinase
is similar to:
PaperBLAST

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

25% id,
89% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

25% id,
90% cov

SWIT_RS00610 Swit_0121 WP_011950973.1: adenosine kinase
is similar to:
PaperBLAST

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

31% id,
39% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

31% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory