Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

manD SWIT_RS08555 Swit_1693 WP_011952534.1: mannonate dehydratase is similar to:	PaperBLAST
MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii	100% id, 100% cov
MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.	78% id, 100% cov
MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans	77% id, 100% cov
MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.	75% id, 100% cov
MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides	74% id, 100% cov
MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.	72% id, 100% cov
DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata	72% id, 100% cov
MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides	72% id, 100% cov
MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii	71% id, 100% cov
MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.	71% id, 100% cov
MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum	71% id, 100% cov
MAND_CELJU / B3PDB1: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Cellvibrio japonicus	71% id, 100% cov
MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.	71% id, 100% cov
DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens	71% id, 100% cov
MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum	70% id, 100% cov
MAND_ECOL6 / Q8FHC7: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	71% id, 97% cov
MAND_ECOMS / D8ADB5: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	71% id, 97% cov
MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae	72% id, 96% cov
DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca	42% id, 98% cov
MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.	40% id, 86% cov
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SWIT_RS09540 Swit_1889 WP_011952727.1: D-galactonate dehydratase family protein is similar to:	PaperBLAST
MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii	79% id, 100% cov
MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans	78% id, 100% cov
MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.	74% id, 100% cov
MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.	72% id, 100% cov
MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.	71% id, 100% cov
MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides	70% id, 100% cov
MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.	69% id, 100% cov
MAND_CELJU / B3PDB1: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Cellvibrio japonicus	69% id, 100% cov
MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides	69% id, 100% cov
DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata	69% id, 100% cov
MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae	71% id, 96% cov
DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens	68% id, 100% cov
MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii	67% id, 100% cov
MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum	66% id, 100% cov
MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum	65% id, 100% cov
MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.	65% id, 100% cov
MAND_ECOMS / D8ADB5: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	67% id, 97% cov
MAND_ECOL6 / Q8FHC7: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	67% id, 97% cov
DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca	41% id, 98% cov
MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.	38% id, 86% cov
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SWIT_RS04970 Swit_0975 WP_193377855.1: muconate/chloromuconate family cycloisomerase is similar to:	PaperBLAST
DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata	25% id, 43% cov
MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans	28% id, 36% cov
DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens	32% id, 31% cov
DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca	31% id, 31% cov
MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii	30% id, 32% cov
MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.	28% id, 32% cov
MAND_CELJU / B3PDB1: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Cellvibrio japonicus	27% id, 32% cov
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SWIT_RS09210 Swit_1823 WP_011952662.1: dipeptide epimerase is similar to:	PaperBLAST
DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata	34% id, 18% cov
DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens	34% id, 17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory