Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 15 curated entries in PaperBLAST's database that match '4.2.1.99' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

acnD SWIT_RS24185 Swit_4787 WP_012050960.1: Fe/S-dependent 2-methylisocitrate dehydratase AcnD
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

79% id,
99% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

47% id,
95% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

45% id,
98% cov

More...

acnA SWIT_RS13825 Swit_2731 WP_012048939.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

68% id,
100% cov

ACNA_BRADU / P70920: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Bradyrhizobium diazoefficiens

66% id,
100% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

65% id,
100% cov

More...

SWIT_RS13830 Swit_2732 WP_012048940.1: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
YacI / b0118: AcnB (EC 4.2.1.99) from Escherichia coli
acnB / P36683: AcnB (EC 4.2.1.99) from Escherichia coli

33% id,
63% cov

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnB / Q8ZRS8: aconitate hydratase 2 (EC 4.2.1.99) from Salmonella typhimurium

32% id,
63% cov

SWIT_RS21880 Swit_4327 WP_012050505.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

32% id,
43% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

30% id,
44% cov

citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis

27% id,
42% cov

More...

leuD SWIT_RS23775 Swit_4709 WP_012050882.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

26% id,
24% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

29% id,
21% cov

citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis

27% id,
22% cov

More...

leuD SWIT_RS21875 Swit_4326 WP_012050504.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

31% id,
15% cov

citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis

29% id,
15% cov

ACNA_BRADU / P70920: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Bradyrhizobium diazoefficiens

27% id,
15% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory