Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus wittichii RW1 (GCF_000016765.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhizorhabdus wittichii RW1, or try another query

thrC SWIT_RS07155 Swit_1413 WP_011952255.1: threonine synthase
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

53% id,
100% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

42% id,
100% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

41% id,
100% cov

More...

SWIT_RS02550 Swit_0503 WP_011951351.1: pyridoxal-phosphate dependent enzyme
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

28% id,
83% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

28% id,
83% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

28% id,
81% cov

More...

SWIT_RS20935 Swit_4137 WP_012050315.1: pyridoxal-phosphate dependent enzyme
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

29% id,
78% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

30% id,
74% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

27% id,
77% cov

More...

SWIT_RS20000 Swit_3958 WP_012050142.1: cysteine synthase A
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

25% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory