Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium medicae WSM419 (GCF_000017145.1)

Found 22 curated entries in PaperBLAST's database that match '1.3.8.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sinorhizobium medicae WSM419, or try another query

SMED_RS22665 Smed_4532 WP_012061465.1: isovaleryl-CoA dehydrogenase
is similar to:		 PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum

 66% id,
90% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 42% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 41% id,
99% cov

More...

SMED_RS21235 Smed_4241 WP_026161075.1: isobutyryl-CoA dehydrogenase
is similar to:		 PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

 54% id,
98% cov

ACAD8_HUMAN / Q9UKU7: Isobutyryl-CoA dehydrogenase, mitochondrial; IBDH; Activator-recruited cofactor 42 kDa component; ARC42; Acyl-CoA dehydrogenase family member 8; ACAD-8; EC 1.3.8.5 from Homo sapiens

 57% id,
90% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 45% id,
99% cov

More...

SMED_RS10855 Smed_2175 WP_011976305.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 39% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 38% id,
99% cov

AO353_25680: 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) from Pseudomonas fluorescens

 38% id,
99% cov

More...

SMED_RS23355 Smed_4671 WP_012061601.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 34% id,
99% cov

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

 34% id,
97% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 34% id,
99% cov

More...

SMED_RS02440 Smed_0487 WP_011974690.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 32% id,
98% cov

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

 31% id,
98% cov

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

 31% id,
98% cov

More...

SMED_RS28025 Smed_5653 WP_011970494.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

 26% id,
96% cov

O16843: short-chain 2-methylacyl-CoA dehydrogenase (EC 1.3.8.5) from Ascaris suum

 26% id,
86% cov

ACDSB_HUMAN / P45954: Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial; SBCAD; 2-methyl branched chain acyl-CoA dehydrogenase; 2-MEBCAD; 2-methylbutyryl-coenzyme A dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; EC 1.3.8.5 from Homo sapiens
ACADSB / P45954: Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial (EC 1.3.8.5) from Homo sapiens

 23% id,
81% cov

More...

SMED_RS04665 Smed_0937 WP_011975128.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum

 23% id,
99% cov

Psest_2445: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

 28% id,
68% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 26% id,
70% cov

More...

SMED_RS00735 Smed_0146 WP_011974357.1: acyl-CoA dehydrogenase C-terminal domain-containing protein
is similar to:		 PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

 26% id,
77% cov

Ac3H11_2996: 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) from Acidovorax sp.

 32% id,
61% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 28% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory