Curated BLAST
Searching in Sinorhizobium medicae WSM419 (GCF_000017145.1)
Found 36 curated entries in PaperBLAST's database that match '2.6.1.83' as complete word(s).
These curated entries have 23 distinct sequences.
Running ublast with E ≤ 0.01
Found 9 relevant proteins in Sinorhizobium medicae WSM419, or try another query
SMED_RS07295 Smed_1454 WP_011975609.1: LL-diaminopimelate aminotransferase
is similar to: | PaperBLAST |
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica | 41% id,
100% cov |
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus | 41% id,
99% cov |
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans | 41% id,
98% cov |
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans | 41% id,
97% cov |
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus | 41% id,
97% cov |
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 39% id,
98% cov |
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii
dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii | 35% id,
85% cov |
DAPAT_DESHD / Q18T09: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Desulfitobacterium hafniense
Q18T09: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Desulfitobacterium hafniense | 27% id,
97% cov |
Q3MAL4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 25% id,
95% cov |
A8IW39: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydomonas reinhardtii | 26% id,
90% cov |
DAPAT_ARATH / Q93ZN9: LL-diaminopimelate aminotransferase, chloroplastic; AtDAP-AT; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; Protein ABERRANT GROWTH AND DEATH 2; EC 2.6.1.83 from Arabidopsis thaliana
DAP / Q93ZN9: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana
Q93ZN9: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 25% id,
84% cov |
Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 24% id,
87% cov |
More... |
SMED_RS11150 Smed_2233 WP_011976362.1: pyridoxal phosphate-dependent aminotransferase
is similar to: | PaperBLAST |
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus | 30% id,
99% cov |
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 29% id,
98% cov |
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans | 29% id,
99% cov |
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica | 29% id,
97% cov |
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus | 28% id,
97% cov |
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans | 28% id,
98% cov |
DAPAT_METMP / Q6LX26: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanococcus maripaludis | 24% id,
91% cov |
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii
dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii | 26% id,
78% cov |
More... |
SMED_RS00840 Smed_0167 WP_011974378.1: pyridoxal phosphate-dependent aminotransferase
is similar to: | PaperBLAST |
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica | 29% id,
97% cov |
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans | 30% id,
92% cov |
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans | 28% id,
97% cov |
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus | 29% id,
92% cov |
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus | 29% id,
91% cov |
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 26% id,
93% cov |
DAPAT_METMP / Q6LX26: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanococcus maripaludis | 24% id,
87% cov |
Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 26% id,
81% cov |
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii
dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii | 24% id,
70% cov |
More... |
SMED_RS15855 Smed_3160 WP_012067365.1: pyridoxal phosphate-dependent aminotransferase
is similar to: | PaperBLAST |
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica | 29% id,
98% cov |
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 28% id,
99% cov |
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans | 28% id,
97% cov |
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans | 28% id,
98% cov |
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus | 27% id,
98% cov |
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus | 28% id,
92% cov |
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii
dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii | 27% id,
83% cov |
DAPAT_METMP / Q6LX26: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanococcus maripaludis | 22% id,
91% cov |
More... |
SMED_RS00895 Smed_0178 WP_011974389.1: pyridoxal phosphate-dependent aminotransferase
is similar to: | PaperBLAST |
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 28% id,
95% cov |
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus | 28% id,
94% cov |
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus | 27% id,
95% cov |
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica | 27% id,
93% cov |
A0A6P3CW87: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Verrucomicrobium spinosum | 25% id,
95% cov |
Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 26% id,
73% cov |
More... |
SMED_RS12040 Smed_2412 WP_012066635.1: aminotransferase
is similar to: | PaperBLAST |
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans | 27% id,
98% cov |
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica | 29% id,
89% cov |
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus | 26% id,
92% cov |
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 27% id,
89% cov |
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii
dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii | 25% id,
89% cov |
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans | 23% id,
96% cov |
DAPAT_ARATH / Q93ZN9: LL-diaminopimelate aminotransferase, chloroplastic; AtDAP-AT; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; Protein ABERRANT GROWTH AND DEATH 2; EC 2.6.1.83 from Arabidopsis thaliana
DAP / Q93ZN9: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana
Q93ZN9: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 26% id,
73% cov |
Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 26% id,
73% cov |
A8IW39: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydomonas reinhardtii | 30% id,
54% cov |
A0A6P3CW87: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Verrucomicrobium spinosum | 28% id,
55% cov |
More... |
hisC SMED_RS15675 Smed_3123 WP_012067330.1: histidinol-phosphate transaminase
is similar to: | PaperBLAST |
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans | 24% id,
94% cov |
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus | 26% id,
83% cov |
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans | 26% id,
83% cov |
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis | 27% id,
71% cov |
More... |
SMED_RS31000 Smed_6316 WP_011970993.1: histidinol-phosphate transaminase
is similar to: | PaperBLAST |
DAPAT_CHLTR / O84395: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Chlamydia trachomatis
O84395: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydia trachomatis | 24% id,
71% cov |
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii
dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii | 22% id,
72% cov |
hisC SMED_RS12770 Smed_2550 WP_012066771.1: histidinol-phosphate transaminase
is similar to: | PaperBLAST |
Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 24% id,
44% cov |
DAPAT_ARATH / Q93ZN9: LL-diaminopimelate aminotransferase, chloroplastic; AtDAP-AT; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; Protein ABERRANT GROWTH AND DEATH 2; EC 2.6.1.83 from Arabidopsis thaliana
DAP / Q93ZN9: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana
Q93ZN9: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana | 24% id,
43% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 11 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory