Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium medicae WSM419 (GCF_000017145.1)

Found 5 curated entries in PaperBLAST's database that match 'anthranilate synthase alpha subunit' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium medicae WSM419, or try another query

SMED_RS11455 Smed_2295 WP_012066518.1: anthranilate synthase
is similar to:
PaperBLAST

PHNA_PSEAE / P09785: Anthranilate synthase component 1, pyocyanine specific; AS; ASI; Anthranilate synthase alpha subunit, pyocyanine specific; EC 4.1.3.27 from Pseudomonas aeruginosa

30% id,
92% cov

trpE / AAA25223.1: anthranilate synthase alpha subunit from Lactococcus lactis

30% id,
86% cov

ASA1_ORYSJ / Q94GF1: Anthranilate synthase alpha subunit 1, chloroplastic; OsASA1; EC 4.1.3.27 from Oryza sativa

37% id,
49% cov

More...

SMED_RS13450 Smed_2685 WP_012066901.1: aminodeoxychorismate synthase component I
is similar to:
PaperBLAST

PHNA_PSEAE / P09785: Anthranilate synthase component 1, pyocyanine specific; AS; ASI; Anthranilate synthase alpha subunit, pyocyanine specific; EC 4.1.3.27 from Pseudomonas aeruginosa

30% id,
76% cov

trpE / AAA25223.1: anthranilate synthase alpha subunit from Lactococcus lactis

33% id,
55% cov

ASA1_ORYSJ / Q94GF1: Anthranilate synthase alpha subunit 1, chloroplastic; OsASA1; EC 4.1.3.27 from Oryza sativa

34% id,
47% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory