Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium medicae WSM419 (GCF_000017145.1)

Found 4 curated entries in PaperBLAST's database that match 'anthranilate synthase beta subunit' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium medicae WSM419, or try another query

SMED_RS11455 Smed_2295 WP_012066518.1: anthranilate synthase
is similar to:
PaperBLAST

PHNB_PSEAE / P09786: Anthranilate synthase component 2, pyocyanine specific; AS; ASII; Anthranilate synthase beta subunit, pyocyanine specific; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 from Pseudomonas aeruginosa

39% id,
100% cov

ASB1_ORYSJ / Q7XUS2: Anthranilate synthase beta subunit 1, chloroplastic; OsASB1; Anthranilate synthase, glutamine amidotransferase component 2-1; EC 4.1.3.27 from Oryza sativa

31% id,
97% cov

ASB1_ARATH / Q42565: Anthranilate synthase beta subunit 1, chloroplastic; Anthranilate synthase component 2-1; Anthranilate synthase, glutamine amidotransferase component 2-1; Protein TRYPTOPHAN BIOSYNTHESIS 4; Protein WEAK ETHYLENE INSENSITIVE 7; EC 4.1.3.27 from Arabidopsis thaliana

36% id,
72% cov

More...

carA SMED_RS11130 Smed_2229 WP_011976358.1: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
is similar to:
PaperBLAST

PHNB_PSEAE / P09786: Anthranilate synthase component 2, pyocyanine specific; AS; ASII; Anthranilate synthase beta subunit, pyocyanine specific; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 from Pseudomonas aeruginosa

29% id,
79% cov

guaA SMED_RS17675 Smed_3517 WP_012067712.1: glutamine-hydrolyzing GMP synthase
is similar to:
PaperBLAST

ASB1_ORYSJ / Q7XUS2: Anthranilate synthase beta subunit 1, chloroplastic; OsASB1; Anthranilate synthase, glutamine amidotransferase component 2-1; EC 4.1.3.27 from Oryza sativa

26% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory