Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanococcus aeolicus Nankai-3 (GCF_000017185.1)

Found 39 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanococcus aeolicus Nankai-3, or try another query

MAEO_RS06135 Maeo_1209 WP_011973918.1: homoserine dehydrogenase
is similar to:
PaperBLAST

DHOM_SULTO / F9VNG5: Homoserine dehydrogenase; HDH; HSD; StHSD; EC 1.1.1.3 from Sulfurisphaera tokodaii
F9VNG5: homoserine dehydrogenase (EC 1.1.1.3) from Sulfurisphaera tokodaii

37% id,
98% cov

DHOM_PSECO / P0DXC5: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; EC 1.1.1.3 from Pseudomonas canavaninivorans

36% id,
96% cov

DHOM_PYRHO / O58802: Homoserine dehydrogenase; HDH; HSD; HseDH; EC 1.1.1.3 from Pyrococcus horikoshii
O58802: homoserine dehydrogenase (EC 1.1.1.3) from Pyrococcus horikoshii

30% id,
96% cov

More...

MAEO_RS03365 Maeo_0676 WP_011973392.1: aspartate kinase
is similar to:
PaperBLAST

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

39% id,
57% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron

37% id,
56% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

36% id,
56% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory